Annotate Novel Sequences Based on Hidden Makov Model (HMM)

This module will define the three regions: the 5 prime psba region, the core psba-trnh igs region, the 3 prime trnh region. Please provide three files. The first file should contain multiple sequence alignment of psba region. The second file should contain multiple sequence alignment of trnh region. The third file contains the sequences you would like to annotate. It is recommended that the lenght of the alignment should be between 20-30bp and the number of sequences should be > 10.

Alignment of psba Gene Sequences psba sample file
Alignment of trnh Gene Sequences trnh sample file
Sequences in Fasta Format igs sample file
Output Region

For questions and comments, please send email to cliu@implad.ac.cn or cliu6688@yahoo.com.

Center for Bioinformatics
Institute of Medicinal Plant Development
PeKing Union Medical College
Chinese Academy of Medical Sciences
Address: No. 151, Malianwa North Road, Haidian District, Beijing 100094, P.R.China
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